Paralogons in Arabidopsis thaliana
This site enables exploration of paralogous blocks that were identified within the genome of Arabidopsis thaliana. Protein and mapping data were derived from GenBank on August 28th, 2001. A rapid overview of previous genome-wide analyses is shown here.

Please cite Blanc, G., Hokamp, K. & Wolfe, K. H. (2003) A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res. 13(2), 137-144.


Chromosome Plot

Block detection on the Arabidopsis genome


Select one or more chromosomes for plotting of blocks.

Chromosome 1: Chromosome 3:
Chromosome 2: Chromosome 4:
Chromosome 5:


Include blocks to other chromosomes as well? yes no

Set a minimum threshold for paired proteins per block:

Block age : all, recent, old.



click on button to see plot:

A list of all duplicated genes found in this study is available here

Block detection on the Arabidopsis pseudo ancestral genome


Set a minimum threshold for paired proteins per block:

click on button to see plot:

Ordered list of gene names in the reconstructed genome available here.

Related statistics

STAT

Find Blocks


Type in a protein name to find blocks that include/cover it.
External identifiers (SwissProt, EMBL, etc.) will be mapped to the best matching Genbank protein.
Other keywords will be searched against the available descriptions of Ensembl proteins.

target protein / id / keyword (i.e. At3g27660 or NP_189403.1 or oleosin) :

click on button to start search:



This site is provided and maintained by Ken Wolfe's lab, Genetics Department, Trinity College Dublin.

For questions or remarks please contact the administrator.
Last modified $Date: 2001/11/30 14:08:27 $ nalyses_of_Arabidopsis_Duplications.html